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Data Sources

Web of Microbes

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  1. Kosina SM, Danielewicz MA, Mohammed M, Ray J, Suh Y, Yilmaz S, et al. Exometabolomics Assisted Design and Validation of Synthetic Obligate Mutualism. ACS Synth Biol. 2016;5:569–76. DOI: 10.1021/acssynbio.5b00236.
  2. Baran R, Brodie EL, Mayberry-Lewis J, Hummel E, Da Rocha UN, Chakraborty R, et al. Exometabolite niche partitioning among sympatric soil bacteria. Nat Commun. 2015;6:8289. DOI: 10.1038/ncomms9289.
  3. Baran R, Bowen BP, Northen TR. Untargeted metabolic footprinting reveals a surprising breadth of metabolite uptake and release by Synechococcus sp. PCC 7002. Mol Biosyst. 2011;7:3200. DOI: 10.1039/c1mb05196b.
  4. Erbilgin O, Bowen BP, Kosina SM, Jenkins S, Lau RK, Northen TR. Dynamic substrate preferences and predicted metabolic properties of a simple microbial consortium. 2016. DOI: 10.1186/s12859-017-1478-2.
  5. Kosina SM, Greiner A, Lau RK, Jenkins S, Baran R, Bowen BP, Northen TR. Web of Microbes (WoM): a curated microbial exometabolomics database for linking chemistry and microbes. BMC Microbiology, September 12, 2018 DOI: 10.1186/s12866-018-1256-y. Data available at https://genome.jgi.doe.gov/portal/ENIBEMetabolites_FD/ENIBEMetabolites_FD.info.html
  6. Zhalnina, K., Louie, K.B., Hao, Z., Mansoori, N., da Rocha, U.N., Shi, S., Cho, H., Karaoz, U., Loqué, D., Bowen, B.P., Firestone, M.K., Northen, T.R., Brodie, E.L., 2018. Dynamic root exudate chemistry and microbial substrate preferences drive patterns in rhizosphere microbial community assembly. Nature Microbiology 3, 470–480. doi:10.1038/s41564-018-0129-3 DOI: https://doi.org/10.1038/s41564-018-0129-3. Data available at https://www.nature.com/articles/s41564-018-0129-3#Sec23

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